You mentioned overhaul? Was the frame re-painted. Engine painted? May need to grind some paint from engine mounting points on engine and frame, and where the coil bolts on. PVL recommends an iridium style plug for stronger sparking, especially when checking spark by hand cranking. I take it you have rechecked timing and all wiring/earths, swapped plugs etc..
I just rebuilt my bike and put the PVL stator and coil on, did timing etc on the bench. Made sure ALL of the above were correct and she started 4th kick from a full rebuild.
Good luck and keep us posted on results..
Cheers,
Alex