Seems like you're hard at it James. Nearly ready for a test ride already!
What swing arm are you using? If you move the top shock mounts, chances are that someone will complain if you use the bike for a national competition.
To get the ride height you want.....remove the shocks and then the shock springs. Set the bike on an adjustable jack with the height dictated by your known ground clearance measurement. (While speaking of ground clearance, it would be best practice to have at least 25mm or so to spare before the frame bottoms out to the dirt).
Re-install one shock without spring to the frame mount only. Now raise the rear wheel/swing arm to the travel amount you have figured will work. Next, compress the shock to the stop and then it's a just a matter of finding where the shock needs to be mounted onto the swing arm. Make a mark on the swing arm and let the back wheel back to the ground. Confirm that the new shock position will allow full travel by lining the lower shock eye up with the mark on the swingarm. If that's all good, try clamping the shock to the mark with a G clamp or similar and then test the wheel travel. Now that you know you have found where the shock needs to be mounted, make up some mounts for the swingarm