Not so sure about the holes either, the 1 drawing I have seen regarding holes in the piston for reed valves on CZs had from memory 13mm drilled holes.
Being a piston port motor standard the skirt is above the ports towards tdc Lozza, I guess these would be at close to bdc. From the photos of cylinder it appears that there are 2 extra boost ports machined to feed from the intake ports, would the holes be to allow some mixture in between when the intakes close & the transfers open?
I'm thinking a new genuine piston kit may be the best way to go, that way I can drill & radius to match the drawing
I had the reed block out of my yz465 today & was surprised to see the intake port closed off by the piston at btc, was expecting to see it open