pancho, the SR400 is a destroked/long-rod 500. The cylinder height/bore is the same, so swap in a 500 crank and it is a 500.
I suspect they will be popular in dirt track and vintage RR with big bore pistons to make short-stroke near-500s. The 500 rod ratio is pretty short and they respond well to a longer rod, but that means spacing up the cylinder, lengthening the cam chain and squeezing it back in the frame. A friend built a couple of 500s by welding and reboring the pin holes , long Carrillo rod + big bore. I think they might have been 92x75 but it was a long time ago and I don't remember for sure.
Starting with a 400 crank will make things much easier. Plus it should improve engine parts supply through Yamaha dealers for the old XT/TT/SRs as I don't think Yamaha has changed much.
cheers,
Michael