Thanks guys for all your comments. I have a new barrel but it requires a rebore and a new top end...$400, when I have only recently spent that on the current barrel. The course of action I have decided to take is rule out the cheap fixes first. The mechanical seal was suspect so I have rebuilt that whole system with all new seals. If it was slowly leaking coolant into the clutch cover it won't now. I have also changed coolant to a blue motorcycle coolant so I rule out the coolant and see a colour change in the oil if it does leak into the gear box, replaced all the tired head studs with brand new Honda studs and after Cooch's very interesting comment, I might go half way and put some teflon washers on each end of the head brace. Don't like the idea of racing a 30 year old motocross frame without all its bracing!
You’re attacking a few issues but it sounds like you haven’t actually confirmed what the problem is yet?
Spending $400 on a barrel doesn’t sound like a cheap fix to me.
Unless the barrel has a crack in the liner then I doubt the barrel is the culprit.
If the mechanical seal was the problem then you would have enough water in the gearbox oil for it to be obvious.
Didn’t you run some clear hoses from the pump to watch water flow?
I doubt the shape of the impellor area was causing enough cavitation for it to overheat (although according to my wife I have been wrong before)
If the head stay is causing the head gasket to break seal or the bolts are pulling through the barrel then the head gasket should have shown signs of leaking. The leak will be from the combustion chamber to the water jacket.
Like wise if the head or barrel was warped.
Did any of the gaskets show any signs of this?
I have heard of head stays breaking heads before, the holes in the brace should be slotted to allow for some ‘give’ so it can cope with frame flex.
My money is still on a cracked head, both the heads.
It bothers me that this is still giving you grief, if you want to post down the old barrel, head and an old head gasket I will have a look at them for you. If I can’t find any cracks in them I will wear the return postage cost.