can't see any picture???
You can run your brake rod, parallel, above, below the swing-arm or anywhere you like, as long as where the brake rod meets the brake lever is where the swing-arm pivot bolt is. Right in the center of the bolt.
If it’s not, then the suspension movement will stuff it up. ( eg: if it pivots below the swing-arm, you land of a jump and it locks up the back wheel ).
If you want to get less movement at your brake lever, you need a shorter rear brake lever on the back hub.