firko's onto it in my opinion, ie is it balanced or just trued up perfect. Motors sometimes don't like being put into a different frame for some reason also. Are you running a different frame?. I'd be hopeless giving info on balancing [too old to understand it properly] but like [think it was oldfart] said if your running 8mm bolts go to say 3/8 high quality bolts [just a whisker smaller than 10mm]. Hope you don't get caught out like i have when drilling--where the dowel [if in middle of engine mount hole] starts turning, bugger. Was roadracing my RT1 mmm 30 years ago with no mag cover to help get rid of some heat & the rivets let go. Flywheel got to the corner before me & the vibration stopped instantly--not a good day that. Jut meaning if your running a full flywheel ignition then make sure rivets are ok, [imagine TM is small inner rotor though]. Also, i,m yamaha old school but did the TM250 run a [what do you call it?] like an old villiers--bobweight crank like a TM400 or are they a full flywheel crank, If bobweight then maybe try a TS250 crank.