i have done this job many times, but it's been 6-7 years since i last did it as my 250 is in storage.
the valves are open when cylinder is not on crankcases, you use a screwdriver to turn the RHS ( i think) valve to move the rack so the cylinder can locate, the rack locates over the cam protruding from crankcase when the valves are closed by the screwdriver. i have a original Honda shop manual if you have trouble i can scan it over the weekend.
let me know how you get on mate.