Mate, raced one back in the ealy days of VMX. Their gear boxes were shit, as Bazza said check the dogs but that's only half the problem.
I worked out after many frustrating gear box inspections that when I measured everything it became evident that the problem was that the slector forks only partially engage the gears. This was not a fault of bent this and worn that, it was poor design. I did after may hours of re-spacing and shimming of the gears, fixed it and never had a problem again (did 4 years hard racing prior to sale) Another poxy thing is the kick start gear is made from barley sugar and will break in half if it kicks back, the gear from a MT250 will fit and is much stronger.
Good luck
Bill.