OK, she's back together again and the crank turns freely. I tried a combination of things you guys suggested. At the end of the day I don't think either bearing was pressed into the crankcase enough. A little heating in the oven a bit of gentle persuasion with the dead blow and tongue in the right position and it all seems to be good now. I don't think it is dragging at all now as it turns quiet freely. I didn't buggerise around with the crank as I measured it properly with a dial guage and it seemed to be OK.
BUT.. now the shaft that the clutch basket bolts to (main) has about 1.5mm of end float. Is this right. The gearbox diagram on the Yammy website doesn't show any washers or spacers between the last gear and the LHS crank case, so I assume it's all good. I would hate to get the whole thing back together and have to start again
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