I have an old mag which explains a common practise in USA to change the whole gearbox from an MT into CR. The article says the end result is a much more versatile bike for pretty much all conditions and a bike which will do 100+ mph for desert racing. I'd imagine MT gearboxes would be easier to source. The flip side also explains how to make an MT better by fitting CR clutch & other parts. It's pretty interesting and makes sense when you read it.
Cheers,
K